Variant report

Variant	rs10770062
Chromosome Location	chr11:9805523-9805524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10118	0.82[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs1392026	0.89[ASN][1000 genomes]
rs183110	0.94[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1875030	0.87[ASN][1000 genomes]
rs2173030	0.80[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2645017	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2645029	0.89[CEU][hapmap];0.94[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[ASN][1000 genomes]
rs360120	0.89[CEU][hapmap];0.94[CHB][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs360124	0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs360127	0.89[ASN][1000 genomes]
rs360129	0.89[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.94[ASN][1000 genomes]
rs360130	0.95[ASN][1000 genomes]
rs360131	0.94[ASN][1000 genomes]
rs360132	0.94[ASN][1000 genomes]
rs360140	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs360141	0.88[ASN][1000 genomes]
rs360142	0.80[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs360143	0.89[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs360146	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs360150	0.89[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs360151	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs360158	0.90[CHB][hapmap]
rs380806	0.80[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs391304	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs394315	0.90[ASN][1000 genomes]
rs432849	0.89[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs438151	0.80[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs446760	0.89[CEU][hapmap];0.85[CHB][hapmap]
rs472487	0.89[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs634680	0.89[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6483726	0.80[CHB][hapmap];0.84[JPT][hapmap];0.85[MEX][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv896987	chr11:9759918-9885849	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	esv3384280	chr11:9766350-9911228	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9780600-9813200	Weak transcription	Small Intestine	intestine
2	chr11:9781600-9809000	Weak transcription	Fetal Brain Male	brain
3	chr11:9795200-9812800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr11:9797400-9821800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:9797800-9811800	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:9798000-9809000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:9798200-9810400	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr11:9798600-9811600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:9799000-9806200	Strong transcription	Fetal Muscle Leg	muscle
10	chr11:9799000-9809200	Strong transcription	Fetal Stomach	stomach
11	chr11:9799200-9806200	Strong transcription	Adipose Nuclei	Adipose
12	chr11:9799200-9812000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:9799200-9812200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:9799600-9806200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:9799600-9810600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:9799600-9823400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:9799800-9811600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:9799800-9812000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:9799800-9812200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr11:9799800-9812200	Strong transcription	Liver	Liver
21	chr11:9799800-9814200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:9800000-9807000	Strong transcription	Ovary	ovary
23	chr11:9800200-9805600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:9800200-9823800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr11:9800800-9807200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:9801000-9806400	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr11:9801200-9809600	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr11:9801600-9823800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr11:9802600-9810600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr11:9802800-9808200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr11:9802800-9808200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:9802800-9809400	Weak transcription	HMEC	breast
33	chr11:9802800-9810200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:9803000-9806800	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr11:9803000-9823400	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr11:9803000-9823400	Weak transcription	Psoas Muscle	Psoas
37	chr11:9803200-9806200	Weak transcription	NHEK	skin
38	chr11:9803200-9806400	Weak transcription	Primary B cells from peripheral blood	blood
39	chr11:9803200-9808000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr11:9803200-9808000	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr11:9803200-9809000	Weak transcription	Fetal Thymus	thymus
42	chr11:9803200-9809000	Weak transcription	Right Ventricle	heart
43	chr11:9803200-9809800	Weak transcription	HUVEC	blood vessel
44	chr11:9803200-9811400	Weak transcription	Brain Substantia Nigra	brain
45	chr11:9803200-9828600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:9803200-9828600	Weak transcription	Gastric	stomach
47	chr11:9803200-9828800	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr11:9803400-9806200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:9803400-9806200	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr11:9803400-9806200	Weak transcription	A549	lung

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