Variant report

Variant	rs10119089
Chromosome Location	chr9:16066297-16066298
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10511612	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12339502	0.88[EUR][1000 genomes]
rs13347415	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17784173	0.90[EUR][1000 genomes]
rs4961637	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4961643	0.91[EUR][1000 genomes]
rs9886829	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2761506	chr9:16040491-16093736	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv525782	chr9:16061960-16071439	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2757319	chr9:16063191-16082467	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2759672	chr9:16063191-16082467	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2756177	chr9:16063191-16082467	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16048600-16071400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:16058600-16069400	Weak transcription	Fetal Lung	lung
3	chr9:16058600-16069600	Weak transcription	NHLF	lung
4	chr9:16063800-16069000	Weak transcription	Osteobl	bone
5	chr9:16063800-16069200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:16064200-16069000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr9:16065400-16069400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:16065600-16068400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:16065600-16068400	Weak transcription	NH-A	brain
10	chr9:16065600-16069200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:16065600-16069400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:16065600-16069400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:16065600-16069400	Weak transcription	HMEC	breast
14	chr9:16065600-16070000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:16066000-16066400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links