Variant report

Variant	rs17784173
Chromosome Location	chr9:16070372-16070373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10119089	0.90[EUR][1000 genomes]
rs10511612	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12339502	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13347415	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28422784	0.84[AMR][1000 genomes]
rs4961637	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4961643	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9886829	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2761506	chr9:16040491-16093736	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv525782	chr9:16061960-16071439	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2757319	chr9:16063191-16082467	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2759672	chr9:16063191-16082467	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2756177	chr9:16063191-16082467	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17784173	PLIN2	cis	parietal	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16048600-16071400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:16068400-16070800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:16068400-16071200	Enhancers	NH-A	brain
4	chr9:16068600-16071000	Enhancers	Fetal Stomach	stomach
5	chr9:16068600-16072000	Enhancers	Fetal Muscle Leg	muscle
6	chr9:16068800-16071200	Enhancers	Fetal Muscle Trunk	muscle
7	chr9:16069000-16070600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr9:16069200-16070400	Enhancers	Fetal Heart	heart
9	chr9:16069200-16070600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:16069200-16070600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:16069200-16071400	Enhancers	Fetal Kidney	kidney
12	chr9:16069400-16070400	Enhancers	HSMM	muscle
13	chr9:16069400-16070600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:16069400-16070600	Enhancers	Fetal Lung	lung
15	chr9:16069400-16070800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:16069400-16070800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:16069400-16071600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr9:16069400-16071600	Enhancers	Fetal Thymus	thymus
19	chr9:16069600-16070400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:16069600-16070400	Enhancers	NHLF	lung
21	chr9:16069600-16070800	Enhancers	Adipose Nuclei	Adipose
22	chr9:16069600-16071200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:16069600-16071400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:16069800-16070400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr9:16069800-16070600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
26	chr9:16069800-16071000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:16070000-16070400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:16070000-16070400	Flanking Active TSS	Osteobl	bone
29	chr9:16070000-16070600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr9:16070200-16070600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:16070200-16070600	Flanking Active TSS	HSMMtube	muscle
32	chr9:16070200-16071000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:16070200-16074800	Weak transcription	Ovary	ovary

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