Variant report

Variant	rs10119441
Chromosome Location	chr9:86298195-86298196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86293365..86298412-chr9:86320425..86323449,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135018	Chromatin interaction
ENSG00000254473	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10124714	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10217326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1044214	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10481737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1052690	0.85[ASN][1000 genomes]
rs10868039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140224	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12346707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068465	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2542804	0.93[ASN][1000 genomes]
rs2780971	0.85[ASN][1000 genomes]
rs2780973	0.85[ASN][1000 genomes]
rs2780976	0.85[ASN][1000 genomes]
rs2780994	0.93[ASN][1000 genomes]
rs2781002	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2781004	0.85[ASN][1000 genomes]
rs2781005	0.85[ASN][1000 genomes]
rs2781006	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2781007	0.85[ASN][1000 genomes]
rs2811904	0.85[ASN][1000 genomes]
rs2811910	0.85[ASN][1000 genomes]
rs2811913	0.85[ASN][1000 genomes]
rs2811914	0.85[ASN][1000 genomes]
rs2811918	0.85[ASN][1000 genomes]
rs41308878	0.93[ASN][1000 genomes]
rs41309243	0.93[ASN][1000 genomes]
rs6559740	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746868	0.93[ASN][1000 genomes]
rs72746869	0.93[ASN][1000 genomes]
rs72746871	0.93[ASN][1000 genomes]
rs72746879	0.93[ASN][1000 genomes]
rs72746880	0.93[ASN][1000 genomes]
rs72746882	0.93[ASN][1000 genomes]
rs7866941	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9410882	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1044639	chr9:86252505-86412041	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86260600-86300400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:86263400-86298800	Strong transcription	Fetal Thymus	thymus
3	chr9:86264800-86298200	Strong transcription	Dnd41	blood
4	chr9:86264800-86300200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:86265000-86298800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr9:86266400-86298800	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr9:86269400-86298600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:86273600-86298600	Weak transcription	Stomach Mucosa	stomach
9	chr9:86273600-86299000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:86273800-86304000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:86279800-86299200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:86280400-86307400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:86281600-86298800	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr9:86282000-86298800	Strong transcription	Primary B cells from peripheral blood	blood
15	chr9:86282000-86299000	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr9:86282000-86300000	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr9:86283000-86298200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr9:86283400-86299000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:86284800-86298800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:86286200-86298200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:86289000-86304200	Weak transcription	Ovary	ovary
22	chr9:86289000-86308200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr9:86289000-86321800	Weak transcription	Esophagus	oesophagus
24	chr9:86289600-86298200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:86291000-86299000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr9:86291400-86314400	Weak transcription	Fetal Heart	heart
27	chr9:86291600-86300600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr9:86292800-86308600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr9:86293600-86301200	Weak transcription	Aorta	Aorta
30	chr9:86293600-86301400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr9:86293600-86304200	Weak transcription	Brain Hippocampus Middle	brain
32	chr9:86293600-86317000	Weak transcription	NHLF	lung
33	chr9:86294000-86321800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr9:86294200-86298200	Weak transcription	Colonic Mucosa	Colon
35	chr9:86294200-86298600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:86294200-86305800	Weak transcription	Spleen	Spleen
37	chr9:86294200-86314200	Weak transcription	Gastric	stomach
38	chr9:86294200-86315600	Weak transcription	Right Ventricle	heart
39	chr9:86294200-86320000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr9:86294800-86298200	Weak transcription	Fetal Brain Male	brain
41	chr9:86295000-86301400	Weak transcription	Fetal Kidney	kidney
42	chr9:86295000-86308800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr9:86295000-86313600	Weak transcription	Lung	lung
44	chr9:86295600-86298200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr9:86296000-86298200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr9:86296000-86298800	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr9:86296000-86300200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr9:86296000-86304000	Weak transcription	NHDF-Ad	bronchial
49	chr9:86296000-86320800	Weak transcription	Fetal Brain Female	brain
50	chr9:86296200-86298200	Strong transcription	HUES64 Cell Line	embryonic stem cell

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