Variant report

Variant	rs2811904
Chromosome Location	chr9:86240576-86240577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:86236280..86241962-chr9:86320992..86325340,9	MCF-7	breast:
2	chr9:86238599..86242233-chr9:86242446..86245459,4	K562	blood:
3	chr9:86236616..86242493-chr9:86533666..86537484,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254473	Chromatin interaction
ENSG00000165115	Chromatin interaction
ENSG00000135018	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10119441	0.85[ASN][1000 genomes]
rs10217326	0.85[ASN][1000 genomes]
rs1044214	0.92[ASN][1000 genomes]
rs10481737	0.85[ASN][1000 genomes]
rs1052690	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868039	0.85[ASN][1000 genomes]
rs11140214	0.85[ASN][1000 genomes]
rs12346707	0.85[ASN][1000 genomes]
rs17421460	0.84[AMR][1000 genomes]
rs2542804	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2780971	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2780973	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2780976	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2780994	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2781002	0.92[ASN][1000 genomes]
rs2781004	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2781005	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2781006	0.92[ASN][1000 genomes]
rs2781007	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2811910	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2811913	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2811914	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2811918	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41308878	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs41309243	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs56403955	0.84[AMR][1000 genomes]
rs6559740	0.85[ASN][1000 genomes]
rs72746868	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72746869	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72746871	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72746879	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72746880	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72746882	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9410882	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv516587	chr9:86226119-86255765	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86238600-86265000	Weak transcription	Ovary	ovary
2	chr9:86238800-86241600	Flanking Active TSS	Fetal Thymus	thymus
3	chr9:86238800-86242200	Weak transcription	Gastric	stomach
4	chr9:86238800-86242800	Weak transcription	Esophagus	oesophagus
5	chr9:86238800-86243000	Weak transcription	Lung	lung
6	chr9:86238800-86243600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:86238800-86244400	Weak transcription	Aorta	Aorta
8	chr9:86238800-86246000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:86238800-86246000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:86238800-86254600	Weak transcription	Left Ventricle	heart
11	chr9:86238800-86260600	Weak transcription	Right Ventricle	heart
12	chr9:86238800-86264600	Weak transcription	Psoas Muscle	Psoas
13	chr9:86239000-86240600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr9:86239000-86241400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:86239000-86241400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr9:86239000-86242200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:86239000-86244200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr9:86239000-86244200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr9:86239000-86244400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:86239000-86244400	Weak transcription	HSMM	muscle
21	chr9:86239000-86244600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:86239000-86244600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr9:86239000-86245200	Weak transcription	Fetal Kidney	kidney
24	chr9:86239000-86245400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr9:86239000-86250000	Weak transcription	HSMMtube	muscle
26	chr9:86239000-86264800	Weak transcription	HMEC	breast
27	chr9:86239000-86265200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr9:86239200-86240600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr9:86239200-86240600	Enhancers	K562	blood
30	chr9:86239200-86241200	Enhancers	Fetal Intestine Small	intestine
31	chr9:86239200-86241400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr9:86239200-86241600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:86239200-86241600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr9:86239200-86241600	Weak transcription	Fetal Stomach	stomach
35	chr9:86239200-86241600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr9:86239200-86241600	Flanking Active TSS	Thymus	Thymus
37	chr9:86239200-86241800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr9:86239200-86242000	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr9:86239200-86242200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr9:86239200-86243000	Weak transcription	Stomach Smooth Muscle	stomach
41	chr9:86239200-86243800	Weak transcription	A549	lung
42	chr9:86239200-86243800	Weak transcription	Osteobl	bone
43	chr9:86239200-86244000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr9:86239200-86244000	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr9:86239200-86244000	Weak transcription	NHLF	lung
46	chr9:86239200-86244200	Weak transcription	Colonic Mucosa	Colon
47	chr9:86239200-86244400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr9:86239200-86244800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr9:86239200-86245800	Weak transcription	Brain Germinal Matrix	brain
50	chr9:86239200-86261000	Weak transcription	Muscle Satellite Cultured Cells	--

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