Variant report

Variant	rs56403955
Chromosome Location	chr9:86330054-86330055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:86320099..86325431-chr9:86327361..86332852,10	K562	blood:
2	chr9:86328904..86330988-chr9:86333192..86336000,2	MCF-7	breast:
3	chr9:86329597..86331819-chr9:86336407..86338255,2	MCF-7	breast:
4	chr9:86325511..86327596-chr9:86327772..86330083,2	K562	blood:

Variant related genes	Relation type
ENSG00000135018	Chromatin interaction
ENSG00000254473	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10124714	0.92[ASN][1000 genomes]
rs1052690	0.82[AMR][1000 genomes]
rs11140224	0.92[ASN][1000 genomes]
rs17421460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068465	0.92[ASN][1000 genomes]
rs2542804	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2780971	0.84[AMR][1000 genomes]
rs2780973	0.84[AMR][1000 genomes]
rs2780976	0.84[AMR][1000 genomes]
rs2780994	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2781004	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2781005	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2781007	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2811904	0.84[AMR][1000 genomes]
rs2811910	0.84[AMR][1000 genomes]
rs2811913	0.84[AMR][1000 genomes]
rs2811914	0.84[AMR][1000 genomes]
rs2811918	0.84[AMR][1000 genomes]
rs41308878	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41309243	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72746868	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72746869	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72746871	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72746879	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72746880	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72746882	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7866941	0.92[ASN][1000 genomes]
rs9410882	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044639	chr9:86252505-86412041	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv893513	chr9:86298632-86433459	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86324200-86330400	Weak transcription	HSMMtube	muscle
2	chr9:86324200-86331000	Weak transcription	Brain Angular Gyrus	brain
3	chr9:86324200-86331800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr9:86328200-86331000	Weak transcription	Liver	Liver
5	chr9:86328400-86330400	Weak transcription	Brain Hippocampus Middle	brain

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