Variant report

Variant	rs11140224
Chromosome Location	chr9:86328255-86328256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10119441	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10124714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10217326	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1044214	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10481737	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10868039	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11140214	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12346707	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17421460	0.92[ASN][1000 genomes]
rs2068465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2781002	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2781006	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56403955	0.92[ASN][1000 genomes]
rs6559740	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7024716	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7866941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044639	chr9:86252505-86412041	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv893513	chr9:86298632-86433459	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86324200-86328800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr9:86324200-86328800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr9:86324200-86329000	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:86324200-86329200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr9:86324200-86329200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:86324200-86330000	Weak transcription	Primary T cells from cord blood	blood
7	chr9:86324200-86330400	Weak transcription	HSMMtube	muscle
8	chr9:86324200-86331000	Weak transcription	Brain Angular Gyrus	brain
9	chr9:86324200-86331800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr9:86324400-86328400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr9:86324600-86328400	Weak transcription	Pancreas	Pancrea
12	chr9:86324600-86329000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr9:86327800-86328400	Strong transcription	Brain Hippocampus Middle	brain
14	chr9:86328200-86329800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr9:86328200-86329800	Weak transcription	Brain Substantia Nigra	brain
16	chr9:86328200-86331000	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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