Variant report

Variant	rs10119662
Chromosome Location	chr9:72822279-72822280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1052684	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10780923	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10868752	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10868757	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10868799	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11142029	0.81[EUR][1000 genomes]
rs11142098	0.82[EUR][1000 genomes]
rs11142350	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1536956	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1927115	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1927128	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1927139	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2026136	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2148861	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2182736	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2182739	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2210086	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2281935	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2309611	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2309612	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2309633	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2309642	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2309647	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3847321	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3858107	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4375070	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4744990	0.81[ASN][1000 genomes]
rs6560019	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7021420	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7027209	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7043043	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7469211	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7866915	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9650766	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72793000-72842600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:72802000-72827000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:72809600-72837800	Weak transcription	NH-A	brain
4	chr9:72810800-72827800	Weak transcription	Colon Smooth Muscle	Colon
5	chr9:72820600-72826800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:72820800-72827200	Weak transcription	Left Ventricle	heart
7	chr9:72820800-72827200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr9:72820800-72835400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr9:72821000-72823200	Weak transcription	Liver	Liver
10	chr9:72821000-72827200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr9:72821000-72827400	Weak transcription	HSMM	muscle
12	chr9:72821200-72825800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr9:72821200-72827200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:72821200-72827400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:72821200-72828200	Weak transcription	HSMMtube	muscle
16	chr9:72821200-72844800	Weak transcription	HMEC	breast
17	chr9:72821400-72826000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr9:72821400-72827600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:72821400-72829800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr9:72821400-72830200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr9:72821400-72832000	Weak transcription	NHEK	skin

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