Variant report

Variant	rs10868799
Chromosome Location	chr9:72905362-72905363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:72904493..72907412-chr9:72913859..72916976,3	K562	blood:
2	chr9:72897081..72899736-chr9:72903507..72905906,2	K562	blood:
3	chr9:72905306..72907170-chr9:72915161..72918867,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10119662	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10125617	0.86[JPT][hapmap]
rs1052684	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10780923	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10868720	0.87[CEU][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs10868752	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10868757	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10868775	0.84[EUR][1000 genomes]
rs10868801	0.87[JPT][hapmap]
rs10868806	0.85[JPT][hapmap]
rs11142350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1536956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1927099	0.81[EUR][1000 genomes]
rs1927102	0.81[EUR][1000 genomes]
rs1927128	0.80[ASN][1000 genomes]
rs1927139	0.80[ASN][1000 genomes]
rs2026136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2182736	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2182739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2210086	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2309611	0.95[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2309612	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2309633	0.80[ASN][1000 genomes]
rs2309642	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2309647	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3847321	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3858107	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4375070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744990	0.81[ASN][1000 genomes]
rs4745000	0.86[JPT][hapmap]
rs6560127	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7021420	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7027209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7043043	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7469211	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7866915	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9650766	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv831615	chr9:72852705-73019692	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1049132	chr9:72895382-73005897	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72875000-72949800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:72875400-72906200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:72876000-72906200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:72876400-72916800	Weak transcription	Colonic Mucosa	Colon
5	chr9:72876400-72939400	Weak transcription	Spleen	Spleen
6	chr9:72876400-72942600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:72876400-72955200	Weak transcription	Stomach Mucosa	stomach
8	chr9:72877000-72939800	Weak transcription	Gastric	stomach
9	chr9:72877000-72942800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:72877600-72909600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:72877600-72935800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr9:72878600-72937600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr9:72880000-72939400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr9:72880200-72906200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:72882800-72906000	Weak transcription	K562	blood
16	chr9:72885400-72916800	Weak transcription	Esophagus	oesophagus
17	chr9:72887600-72906200	Weak transcription	Psoas Muscle	Psoas
18	chr9:72887600-72916800	Weak transcription	Aorta	Aorta
19	chr9:72890000-72905800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:72891000-72908800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr9:72891000-72911000	Strong transcription	HSMM	muscle
22	chr9:72891000-72923400	Strong transcription	Dnd41	blood
23	chr9:72891200-72907400	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr9:72891400-72948200	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr9:72892800-72907600	Strong transcription	NH-A	brain
26	chr9:72893000-72906600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr9:72893400-72906000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr9:72893400-72907400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr9:72893400-72908000	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr9:72894600-72917000	Weak transcription	Pancreas	Pancrea
31	chr9:72895400-72906600	Weak transcription	Fetal Brain Female	brain
32	chr9:72896200-72906200	Weak transcription	Brain Anterior Caudate	brain
33	chr9:72896200-72916800	Weak transcription	Right Ventricle	heart
34	chr9:72897800-72912800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr9:72898200-72906200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr9:72898200-72922200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr9:72898600-72906200	Weak transcription	Fetal Intestine Small	intestine
38	chr9:72898600-72912800	Weak transcription	Fetal Brain Male	brain
39	chr9:72899000-72905600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr9:72899000-72906200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr9:72899000-72906800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr9:72899000-72914600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr9:72899200-72905600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr9:72899200-72914200	Weak transcription	NHEK	skin
45	chr9:72899600-72913000	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr9:72900000-72907600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr9:72900200-72906000	Weak transcription	Fetal Heart	heart
48	chr9:72900200-72906800	Strong transcription	Fetal Intestine Large	intestine
49	chr9:72900400-72906000	Weak transcription	Ovary	ovary
50	chr9:72900600-72905800	Weak transcription	HSMMtube	muscle

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