Variant report

Variant	rs7021420
Chromosome Location	chr9:72916605-72916606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:72905306..72907170-chr9:72915161..72918867,3	K562	blood:
2	chr9:72873487..72875340-chr9:72915258..72917864,2	MCF-7	breast:
3	chr9:72904493..72907412-chr9:72913859..72916976,3	K562	blood:
4	chr9:72915207..72917805-chr9:72934554..72936144,2	K562	blood:

Variant related genes	Relation type
ENSG00000268364	Chromatin interaction
ENSG00000198887	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10119662	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1052684	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10780923	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10868720	0.82[EUR][1000 genomes]
rs10868752	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10868757	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10868775	0.83[EUR][1000 genomes]
rs10868799	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11142350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1536956	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1927099	0.82[EUR][1000 genomes]
rs1927128	0.81[ASN][1000 genomes]
rs1927139	0.81[ASN][1000 genomes]
rs2026136	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2182736	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2182739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2210086	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2309611	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2309612	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2309633	0.81[ASN][1000 genomes]
rs2309642	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2309647	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3847321	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3858107	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4375070	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4744990	0.81[ASN][1000 genomes]
rs6560019	0.81[ASN][1000 genomes]
rs6560127	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7027209	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7043043	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7469211	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7866915	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9650766	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv831615	chr9:72852705-73019692	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1049132	chr9:72895382-73005897	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72875000-72949800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:72876400-72916800	Weak transcription	Colonic Mucosa	Colon
3	chr9:72876400-72939400	Weak transcription	Spleen	Spleen
4	chr9:72876400-72942600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:72876400-72955200	Weak transcription	Stomach Mucosa	stomach
6	chr9:72877000-72939800	Weak transcription	Gastric	stomach
7	chr9:72877000-72942800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:72877600-72935800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:72878600-72937600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr9:72880000-72939400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr9:72885400-72916800	Weak transcription	Esophagus	oesophagus
12	chr9:72887600-72916800	Weak transcription	Aorta	Aorta
13	chr9:72891000-72923400	Strong transcription	Dnd41	blood
14	chr9:72891400-72948200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr9:72894600-72917000	Weak transcription	Pancreas	Pancrea
16	chr9:72896200-72916800	Weak transcription	Right Ventricle	heart
17	chr9:72898200-72922200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr9:72900600-72916800	Weak transcription	Lung	lung
19	chr9:72900600-72916800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr9:72900600-72924000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr9:72900600-72939400	Weak transcription	Small Intestine	intestine
22	chr9:72900600-72942600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr9:72900800-72916800	Weak transcription	Brain Substantia Nigra	brain
24	chr9:72903000-72930400	Weak transcription	Brain Angular Gyrus	brain
25	chr9:72906800-72916800	Weak transcription	Thymus	Thymus
26	chr9:72906800-72919000	Weak transcription	Ovary	ovary
27	chr9:72907000-72916800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:72907000-72916800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr9:72907000-72917200	Strong transcription	Primary B cells from cord blood	blood
30	chr9:72907000-72917600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr9:72907000-72924600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:72907200-72942600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr9:72908000-72924400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr9:72908800-72917600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr9:72908800-72942800	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr9:72909200-72927400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr9:72909600-72917400	Weak transcription	Brain Germinal Matrix	brain
38	chr9:72909800-72920800	Weak transcription	K562	blood
39	chr9:72910000-72922600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr9:72910200-72916800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr9:72910200-72917000	Weak transcription	Fetal Intestine Small	intestine
42	chr9:72910200-72917000	Weak transcription	Fetal Stomach	stomach
43	chr9:72910200-72924600	Weak transcription	Psoas Muscle	Psoas
44	chr9:72910800-72929400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr9:72911000-72921200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr9:72911200-72924000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr9:72911400-72930000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr9:72911600-72925000	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr9:72911800-72923200	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr9:72912000-72917200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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