Variant report

Variant	rs10119850
Chromosome Location	chr9:110503742-110503743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110500719..110502247-chr9:110502621..110504318,2	MCF-7	breast:
2	chr9:110503474..110505849-chr9:110510284..110512558,2	MCF-7	breast:
3	chr9:110251154..110252819-chr9:110502244..110504957,2	MCF-7	breast:
4	chr9:110249403..110253964-chr9:110500193..110503915,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1880143	0.92[CEU][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2030640	0.80[CHB][hapmap]
rs2030641	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv525064	chr9:110501437-110504358	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110495800-110504200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:110496000-110510800	Weak transcription	Aorta	Aorta
3	chr9:110497200-110506600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:110497200-110506800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr9:110497400-110503800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:110497400-110510800	Weak transcription	Psoas Muscle	Psoas
7	chr9:110499400-110504800	Enhancers	Fetal Muscle Trunk	muscle
8	chr9:110499800-110505200	Enhancers	Adipose Nuclei	Adipose
9	chr9:110500000-110504000	Enhancers	Stomach Mucosa	stomach
10	chr9:110500000-110504200	Enhancers	Fetal Muscle Leg	muscle
11	chr9:110500000-110505000	Weak transcription	Spleen	Spleen
12	chr9:110500600-110504000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:110500800-110511600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:110501000-110507000	Weak transcription	GM12878-XiMat	blood
15	chr9:110501200-110510600	Weak transcription	Brain Anterior Caudate	brain
16	chr9:110501400-110504000	Enhancers	Hela-S3	cervix
17	chr9:110501400-110504200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:110502200-110504200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:110502600-110504800	Weak transcription	Fetal Brain Male	brain
20	chr9:110502600-110511600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:110503000-110504200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr9:110503000-110504200	Weak transcription	Right Atrium	heart
23	chr9:110503000-110504800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:110503000-110504800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:110503000-110504800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr9:110503000-110504800	Weak transcription	Esophagus	oesophagus
27	chr9:110503000-110510400	Weak transcription	Right Ventricle	heart
28	chr9:110503000-110510600	Weak transcription	Left Ventricle	heart
29	chr9:110503000-110510800	Weak transcription	Placenta	Placenta
30	chr9:110503000-110511400	Weak transcription	NHLF	lung
31	chr9:110503200-110504200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr9:110503200-110504200	Weak transcription	NHEK	skin
33	chr9:110503600-110504000	Weak transcription	Ovary	ovary
34	chr9:110503600-110505200	Enhancers	Fetal Lung	lung

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