Variant report

Variant	rs1012008
Chromosome Location	chr7:151018245-151018246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1012007	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12535753	0.84[ASN][1000 genomes]
rs12539643	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17173769	1.00[ASW][hapmap]
rs2792440	0.90[ASN][1000 genomes]
rs401168	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs4725401	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73171826	0.90[ASN][1000 genomes]
rs760234	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs887018	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs909210	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:151017200-151019600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:151017200-151025400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:151017400-151019800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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