Variant report

Variant	rs10120862
Chromosome Location	chr2:12767681-12767682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10116053	0.83[AMR][1000 genomes]
rs10116196	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10116722	0.83[AMR][1000 genomes]
rs10118097	0.83[AMR][1000 genomes]
rs10119949	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10982750	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10982751	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12342379	0.83[AMR][1000 genomes]
rs12350301	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760581	chr2:12515713-12827258	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv581000	chr2:12540865-12840575	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12761000-12768200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr2:12766200-12768800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:12766200-12770200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr2:12766200-12772400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr2:12766400-12769600	Active TSS	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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