Variant report

Variant	rs10116053
Chromosome Location	chr9:118196252-118196253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10116196	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10116722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118097	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10119949	0.83[AMR][1000 genomes]
rs10120862	0.83[AMR][1000 genomes]
rs10982750	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10982751	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12342379	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12350301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55951022	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56148650	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56168488	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72750125	0.91[EUR][1000 genomes]
rs72750135	0.91[EUR][1000 genomes]
rs72750136	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72750139	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72750141	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72750142	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72750146	0.91[EUR][1000 genomes]
rs72750149	0.91[EUR][1000 genomes]
rs72751861	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042957	chr9:118153824-118313540	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv15906	chr9:118195950-118197377	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118192800-118208000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:118193800-118198600	Weak transcription	Fetal Kidney	kidney
3	chr9:118195800-118196400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links