Variant report

Variant	rs72750139
Chromosome Location	chr9:118183544-118183545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10116053	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10116196	0.91[EUR][1000 genomes]
rs10116722	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10118097	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10982750	0.91[EUR][1000 genomes]
rs10982751	0.91[EUR][1000 genomes]
rs12342379	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12350301	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55951022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56148650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56168488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72750125	1.00[EUR][1000 genomes]
rs72750135	1.00[EUR][1000 genomes]
rs72750136	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72750141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72750142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72750146	1.00[EUR][1000 genomes]
rs72750149	1.00[EUR][1000 genomes]
rs72751861	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042957	chr9:118153824-118313540	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118177600-118188800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:118180600-118184800	Weak transcription	Osteobl	bone
3	chr9:118183000-118184800	Weak transcription	Pancreas	Pancrea
4	chr9:118183000-118187000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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