Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10116053	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10116196	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10116722	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10118097	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10119949	1.00[AMR][1000 genomes]
rs10120862	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10982751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12342379	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12350301	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55951022	0.91[EUR][1000 genomes]
rs56148650	0.91[EUR][1000 genomes]
rs56168488	0.91[EUR][1000 genomes]
rs72750125	0.91[EUR][1000 genomes]
rs72750135	0.91[EUR][1000 genomes]
rs72750136	0.91[EUR][1000 genomes]
rs72750139	0.91[EUR][1000 genomes]
rs72750141	0.91[EUR][1000 genomes]
rs72750142	0.91[EUR][1000 genomes]
rs72750146	0.91[EUR][1000 genomes]
rs72750149	0.91[EUR][1000 genomes]
rs72751861	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042957	chr9:118153824-118313540	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118192800-118208000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:118196400-118207200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:118198800-118216000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr9:118200400-118204400	Weak transcription	Fetal Lung	lung
5	chr9:118203000-118206800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr9:118203800-118204800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:118204000-118204800	Enhancers	Fetal Kidney	kidney
8	chr9:118204200-118204600	Enhancers	Adipose Nuclei	Adipose
9	chr9:118204200-118205000	Enhancers	Fetal Intestine Large	intestine
10	chr9:118204200-118205000	Enhancers	Fetal Intestine Small	intestine
11	chr9:118204200-118205000	Enhancers	Fetal Stomach	stomach
12	chr9:118204200-118207400	Weak transcription	Colon Smooth Muscle	Colon

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