Variant report

Variant	rs10121121
Chromosome Location	chr9:101286121-101286122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10115107	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10121587	1.00[EUR][1000 genomes]
rs10121704	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10733671	0.98[AFR][1000 genomes]
rs12347388	0.95[EUR][1000 genomes]
rs2095121	0.97[AFR][1000 genomes]
rs2779565	0.96[AFR][1000 genomes]
rs55703227	1.00[EUR][1000 genomes]
rs55807407	1.00[EUR][1000 genomes]
rs55981436	0.83[EUR][1000 genomes]
rs56177517	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56339226	0.84[EUR][1000 genomes]
rs6478743	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6478747	0.98[EUR][1000 genomes]
rs7024986	0.94[AFR][1000 genomes]
rs7855197	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101283800-101288000	Weak transcription	Fetal Brain Male	brain
2	chr9:101286000-101288400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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