Variant report

Variant	rs10121587
Chromosome Location	chr9:101282692-101282693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10115107	0.98[EUR][1000 genomes]
rs10121121	1.00[EUR][1000 genomes]
rs10121704	1.00[EUR][1000 genomes]
rs12347388	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55703227	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55807407	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55981436	0.83[EUR][1000 genomes]
rs56177517	1.00[EUR][1000 genomes]
rs56339226	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6478743	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6478747	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7855197	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101275800-101282800	Weak transcription	Fetal Brain Male	brain
2	chr9:101281400-101282800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr9:101282400-101283800	Enhancers	NH-A	brain
4	chr9:101282400-101284000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:101282400-101286000	Enhancers	HUVEC	blood vessel
6	chr9:101282600-101283800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:101282600-101284000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:101282600-101284200	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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