Variant report

Variant	rs55981436
Chromosome Location	chr9:101256761-101256762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101241326..101244044-chr9:101256381..101258568,2	MCF-7	breast:
2	chr9:101255446..101257717-chr9:101267455..101269110,2	MCF-7	breast:
3	chr9:101255431..101257396-chr9:101263161..101266108,2	MCF-7	breast:
4	chr9:101256344..101258940-chr9:101261291..101264449,3	K562	blood:
5	chr9:101250556..101252952-chr9:101255727..101258630,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKS6-5	chr9:101254669-101258646	NONHSAT133604

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10115107	0.82[EUR][1000 genomes]
rs10121121	0.83[EUR][1000 genomes]
rs10121587	0.83[EUR][1000 genomes]
rs10121704	0.83[EUR][1000 genomes]
rs12347388	0.88[EUR][1000 genomes]
rs55703227	0.83[EUR][1000 genomes]
rs55807407	0.83[EUR][1000 genomes]
rs56177517	0.83[EUR][1000 genomes]
rs6478743	0.83[EUR][1000 genomes]
rs6478747	0.82[EUR][1000 genomes]
rs7855197	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv6630	chr9:101236324-101267349	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101247000-101263800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:101248400-101264200	Weak transcription	Brain Angular Gyrus	brain
3	chr9:101248800-101264200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:101251600-101258400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr9:101251600-101263800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:101254000-101257400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:101255200-101256800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:101255200-101257000	Weak transcription	Fetal Brain Female	brain
9	chr9:101256200-101256800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
10	chr9:101256200-101257600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:101256200-101258800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links