Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93721091..93723292-chr9:93744303..93746811,2	MCF-7	breast:
2	chr9:93721472..93723277-chr9:94184160..94186218,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165030	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10115615	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10465159	0.87[EUR][1000 genomes]
rs10820823	0.91[EUR][1000 genomes]
rs10820824	0.94[EUR][1000 genomes]
rs10991703	0.87[EUR][1000 genomes]
rs10991704	0.87[EUR][1000 genomes]
rs10991705	0.87[EUR][1000 genomes]
rs10991729	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991734	1.00[EUR][1000 genomes]
rs12236287	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12352804	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13294492	0.87[EUR][1000 genomes]
rs1888276	0.84[EUR][1000 genomes]
rs1888277	0.84[EUR][1000 genomes]
rs28425571	0.94[EUR][1000 genomes]
rs34755929	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs36034099	0.94[EUR][1000 genomes]
rs4452924	0.97[EUR][1000 genomes]
rs7030712	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs715728	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73653514	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93718400-93723000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:93718600-93723200	Weak transcription	HMEC	breast
3	chr9:93718600-93723600	Weak transcription	Aorta	Aorta
4	chr9:93718800-93723800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:93718800-93726800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:93718800-93727200	Weak transcription	NHEK	skin
7	chr9:93719200-93722600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:93719200-93723000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:93719200-93723000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:93719200-93723200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:93719400-93722800	Weak transcription	Osteobl	bone
12	chr9:93719600-93723200	Weak transcription	NHDF-Ad	bronchial
13	chr9:93720200-93721600	Enhancers	Placenta Amnion	Placenta Amnion
14	chr9:93720400-93721600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr9:93721000-93721600	Enhancers	Stomach Mucosa	stomach
16	chr9:93721000-93722800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:93721000-93723400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:93721200-93726600	Weak transcription	Esophagus	oesophagus
19	chr9:93721200-93726600	Weak transcription	Ovary	ovary

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