Variant report

Variant	rs10465159
Chromosome Location	chr9:93696550-93696551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:93688980..93691627-chr9:93693965..93698752,5	MCF-7	breast:
2	chr9:93692079..93694930-chr9:93695020..93697604,3	MCF-7	breast:
3	chr9:93685464..93688726-chr9:93695370..93697391,4	MCF-7	breast:
4	chr9:93694606..93697511-chr9:93699308..93700844,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10115615	0.87[EUR][1000 genomes]
rs10121625	0.87[EUR][1000 genomes]
rs10820824	0.82[EUR][1000 genomes]
rs10991690	0.89[ASN][1000 genomes]
rs10991692	0.89[ASN][1000 genomes]
rs10991693	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10991695	0.89[ASN][1000 genomes]
rs10991696	0.89[ASN][1000 genomes]
rs10991699	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10991703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991705	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991729	0.87[EUR][1000 genomes]
rs10991734	0.87[EUR][1000 genomes]
rs10993756	0.82[ASN][1000 genomes]
rs10993760	0.82[ASN][1000 genomes]
rs12236287	1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12352804	0.87[EUR][1000 genomes]
rs13294492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1585460	0.82[ASN][1000 genomes]
rs16906964	0.85[CHB][hapmap];0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1888276	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1888277	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2184540	1.00[YRI][hapmap]
rs28425571	0.82[EUR][1000 genomes]
rs34755929	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35547454	0.89[ASN][1000 genomes]
rs35672759	0.89[ASN][1000 genomes]
rs36034099	0.82[EUR][1000 genomes]
rs4452924	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7030712	0.87[EUR][1000 genomes]
rs715728	0.87[EUR][1000 genomes]
rs73653514	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv416826	chr9:93688735-93698322	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93692800-93701600	Weak transcription	Fetal Brain Female	brain
2	chr9:93696400-93696600	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr9:93696400-93697400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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