Variant report

Variant	rs10991699
Chromosome Location	chr9:93698192-93698193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10465159	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10991690	0.81[ASN][1000 genomes]
rs10991692	0.81[ASN][1000 genomes]
rs10991693	0.81[ASN][1000 genomes]
rs10991695	0.81[ASN][1000 genomes]
rs10991696	0.81[ASN][1000 genomes]
rs10991703	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10991704	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10991705	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13294492	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16906964	0.81[ASN][1000 genomes]
rs1888276	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1888277	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34755929	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35547454	0.81[ASN][1000 genomes]
rs35672759	0.81[ASN][1000 genomes]
rs4452924	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv416826	chr9:93688735-93698322	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93692800-93701600	Weak transcription	Fetal Brain Female	brain
2	chr9:93697200-93698600	Enhancers	HMEC	breast
3	chr9:93697400-93698600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:93697400-93698600	Enhancers	Esophagus	oesophagus
5	chr9:93697600-93698600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:93698000-93704200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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