Variant report

Variant	rs16906964
Chromosome Location	chr9:93677831-93677832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:93677591..93678197-chr9:93726277..93726861,2	MCF-7	breast:
2	chr9:93677729..93678282-chr9:93715398..93716120,3	MCF-7	breast:
3	chr9:93677265..93679731-chr9:93797817..93800776,2	MCF-7	breast:
4	chr9:93677484..93678606-chr9:93720589..93721191,4	MCF-7	breast:
5	chr9:93676448..93679298-chr9:93745001..93748121,3	MCF-7	breast:
6	chr9:93676720..93679314-chr9:93684985..93688336,3	MCF-7	breast:
7	chr9:93677411..93678645-chr9:93726265..93727086,3	MCF-7	breast:
8	chr9:93677031..93677848-chr9:93745356..93746083,4	MCF-7	breast:
9	chr9:93676355..93678858-chr9:93753040..93754661,2	MCF-7	breast:
10	chr9:93677665..93682323-chr9:93683536..93687193,5	MCF-7	breast:
11	chr9:93674734..93679080-chr9:94183928..94188692,8	MCF-7	breast:
12	chr9:93676958..93678063-chr9:93745221..93746937,9	MCF-7	breast:
13	chr9:93677407..93679291-chr9:94178811..94181688,2	MCF-7	breast:
14	chr9:93677369..93677923-chr9:93881735..93882698,2	K562	blood:
15	chr9:93667547..93672614-chr9:93675610..93678546,4	MCF-7	breast:
16	chr9:93675751..93682846-chr9:94184185..94190004,10	MCF-7	breast:
17	chr9:93676920..93679148-chr9:93718490..93720720,2	MCF-7	breast:
18	chr9:93677291..93677869-chr9:94195160..94195912,2	MCF-7	breast:
19	chr9:93676159..93678392-chr9:93740956..93744804,3	MCF-7	breast:
20	chr9:93677459..93679335-chr9:93682010..93683558,2	MCF-7	breast:
21	chr9:93675804..93678355-chr9:93746477..93748516,2	MCF-7	breast:
22	chr9:93677133..93677996-chr9:93715404..93716043,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000165030	Chromatin interaction
ENSG00000233081	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10465159	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10991690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991692	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991693	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10991695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991699	0.81[ASN][1000 genomes]
rs10991703	0.89[ASN][1000 genomes]
rs10991704	0.89[ASN][1000 genomes]
rs10991705	0.89[ASN][1000 genomes]
rs10993756	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10993760	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13294492	0.89[ASN][1000 genomes]
rs1585460	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1888276	0.82[ASN][1000 genomes]
rs1888277	0.82[ASN][1000 genomes]
rs34755929	0.89[ASN][1000 genomes]
rs35547454	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35672759	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4452924	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1038685	chr9:93556174-93685729	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1039761	chr9:93598856-93677831	Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1039326	chr9:93598856-93685729	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93658800-93683400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:93674000-93681800	Weak transcription	Pancreas	Pancrea
3	chr9:93677000-93678000	Enhancers	Stomach Mucosa	stomach
4	chr9:93677000-93679200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:93677200-93678000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr9:93677400-93678600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:93677400-93678600	Enhancers	Liver	Liver
8	chr9:93677400-93681600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr9:93677400-93682000	Weak transcription	Fetal Muscle Leg	muscle
10	chr9:93677400-93682200	Weak transcription	Fetal Brain Male	brain
11	chr9:93677600-93678000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:93677600-93678000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr9:93677600-93678000	Enhancers	NHDF-Ad	bronchial
14	chr9:93677600-93679600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:93677800-93678800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr9:93677800-93681400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr9:93677800-93682200	Weak transcription	Fetal Heart	heart
18	chr9:93677800-93682400	Weak transcription	HMEC	breast

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