Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93676720..93679314-chr9:93684985..93688336,3	MCF-7	breast:
2	chr9:93685464..93688726-chr9:93695370..93697391,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10465159	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10991690	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10991692	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10991695	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10991696	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10991699	0.81[ASN][1000 genomes]
rs10991703	0.89[ASN][1000 genomes]
rs10991704	0.89[ASN][1000 genomes]
rs10991705	0.89[ASN][1000 genomes]
rs10993756	0.93[ASN][1000 genomes]
rs10993760	0.93[ASN][1000 genomes]
rs13294492	0.89[ASN][1000 genomes]
rs1585460	0.93[ASN][1000 genomes]
rs16906964	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1888276	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1888277	0.82[ASN][1000 genomes]
rs34755929	0.89[ASN][1000 genomes]
rs35547454	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35672759	1.00[ASN][1000 genomes]
rs4452924	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93683000-93692000	Weak transcription	Right Ventricle	heart
2	chr9:93684000-93687600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:93684000-93688400	Weak transcription	Aorta	Aorta
4	chr9:93684200-93687800	Weak transcription	Adipose Nuclei	Adipose
5	chr9:93684600-93687600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:93685600-93689200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:93686000-93690200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:93686200-93689600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr9:93686400-93688400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:93686600-93687600	Weak transcription	NHEK	skin
11	chr9:93686600-93687800	Weak transcription	HMEC	breast
12	chr9:93686800-93688000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr9:93686800-93690200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:93687000-93690200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:93687200-93688400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:93687200-93689000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr9:93687200-93690000	Enhancers	NHLF	lung
18	chr9:93687400-93689800	Enhancers	Placenta	Placenta
19	chr9:93687400-93690000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:93687400-93690200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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