Variant report
| Variant | rs13294492 |
|---|---|
| Chromosome Location | chr9:93700320-93700321 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:93694606..93697511-chr9:93699308..93700844,2 | MCF-7 | breast: | |
| 2 | chr9:93698542..93700371-chr9:93703211..93706072,2 | K562 | blood: | |
| 3 | chr9:93699190..93702155-chr9:93754434..93756320,2 | MCF-7 | breast: | |
| 4 | chr9:93683951..93686543-chr9:93700116..93702555,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10115615 | 0.87[EUR][1000 genomes] |
| rs10121625 | 0.87[EUR][1000 genomes] |
| rs10465159 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10820824 | 0.82[EUR][1000 genomes] |
| rs10991690 | 0.89[ASN][1000 genomes] |
| rs10991692 | 0.89[ASN][1000 genomes] |
| rs10991693 | 0.89[ASN][1000 genomes] |
| rs10991695 | 0.89[ASN][1000 genomes] |
| rs10991696 | 0.89[ASN][1000 genomes] |
| rs10991699 | 0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10991703 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10991704 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10991705 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10991718 | 1.00[JPT][hapmap] |
| rs10991729 | 0.87[EUR][1000 genomes] |
| rs10991734 | 0.87[EUR][1000 genomes] |
| rs10993756 | 0.82[ASN][1000 genomes] |
| rs10993760 | 0.82[ASN][1000 genomes] |
| rs12236287 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs12352804 | 0.87[EUR][1000 genomes] |
| rs1585460 | 0.82[ASN][1000 genomes] |
| rs16906964 | 1.00[CEU][hapmap];0.89[ASN][1000 genomes] |
| rs1888276 | 0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1888277 | 0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs28425571 | 0.82[EUR][1000 genomes] |
| rs34755929 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35547454 | 0.89[ASN][1000 genomes] |
| rs35672759 | 0.89[ASN][1000 genomes] |
| rs36034099 | 0.82[EUR][1000 genomes] |
| rs4452924 | 0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7030712 | 0.87[EUR][1000 genomes] |
| rs715728 | 0.87[EUR][1000 genomes] |
| rs73653514 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1046989 | chr9:93353987-93800416 | Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv893568 | chr9:93539879-93774385 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:93692800-93701600 | Weak transcription | Fetal Brain Female | brain |
| 2 | chr9:93698000-93704200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
