Variant report

Variant	rs10122888
Chromosome Location	chr9:9123289-9123290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10115009	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10117009	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10117634	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10118348	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10120781	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121415	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124317	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs10125527	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10977508	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10977509	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10977514	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10977516	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10977517	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs12335759	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12335761	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12336672	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12337224	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12339653	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12341389	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12349866	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12350219	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12351020	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12352800	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28567443	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56699508	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57688746	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59772000	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60642850	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61192231	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61519553	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72694980	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7864207	0.88[CHB][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9886879	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv892248	chr9:9024254-9176176	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv892249	chr9:9026854-9377679	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv892250	chr9:9032693-9125205	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1033404	chr9:9058285-9211223	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv831505	chr9:9072216-9277320	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv518679	chr9:9119327-9125205	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9123200-9127000	Weak transcription	Pancreas	Pancrea
2	chr9:9123200-9127400	Weak transcription	Fetal Brain Male	brain

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