Variant report

Variant	rs57688746
Chromosome Location	chr9:9133939-9133940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10120781	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10121415	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10122888	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10125527	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12335759	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12335761	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12336672	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352800	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28567443	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56699508	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59772000	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60642850	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61192231	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61519553	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72694980	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7864207	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9886879	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv892248	chr9:9024254-9176176	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv892249	chr9:9026854-9377679	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1033404	chr9:9058285-9211223	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv831505	chr9:9072216-9277320	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3481898	chr9:9133923-9134486	Flanking Active TSS Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9133600-9134000	Active TSS	Brain Anterior Caudate	brain
2	chr9:9133600-9134000	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr9:9133800-9134000	Flanking Active TSS	Brain Cingulate Gyrus	brain
4	chr9:9133800-9134000	Flanking Active TSS	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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