Variant report

Variant	rs10124559
Chromosome Location	chr9:8741644-8741645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1036331	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10733548	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10758989	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10758990	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10758992	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10815933	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10815934	0.86[ASN][1000 genomes]
rs10977272	0.81[EUR][1000 genomes]
rs10977273	0.81[EUR][1000 genomes]
rs10977274	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10977276	0.80[ASN][1000 genomes]
rs10977280	0.81[EUR][1000 genomes]
rs12003472	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12349666	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1274975	0.80[ASN][1000 genomes]
rs1434270	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1434271	0.83[EUR][1000 genomes]
rs1812782	0.80[ASN][1000 genomes]
rs2033553	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2033555	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2117327	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2117329	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2381897	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2381898	0.86[ASN][1000 genomes]
rs2381899	0.86[ASN][1000 genomes]
rs2381900	0.86[ASN][1000 genomes]
rs2381901	0.86[ASN][1000 genomes]
rs2381902	0.86[ASN][1000 genomes]
rs2890831	0.86[ASN][1000 genomes]
rs4460431	0.85[ASN][1000 genomes]
rs4742533	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4742535	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6477348	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7026316	0.86[ASN][1000 genomes]
rs7042505	0.86[ASN][1000 genomes]
rs7045482	0.86[ASN][1000 genomes]
rs7846940	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7853986	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7862702	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7863593	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7868093	0.86[ASN][1000 genomes]
rs8181076	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs956154	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv892235	chr9:8700396-8865925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv6474	chr9:8706602-8751414	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8722000-8744600	Weak transcription	Dnd41	blood
2	chr9:8734200-8743400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:8735600-8750600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:8737200-8742800	Weak transcription	Fetal Brain Male	brain
5	chr9:8737200-8750400	Weak transcription	Fetal Heart	heart
6	chr9:8737600-8750600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr9:8739200-8743200	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:8739400-8747400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:8740600-8742800	Weak transcription	Brain Substantia Nigra	brain
10	chr9:8741400-8743200	Weak transcription	Brain Cingulate Gyrus	brain

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