Variant report

Variant	rs2381898
Chromosome Location	chr9:8775887-8775888
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10124559	0.86[ASN][1000 genomes]
rs1036326	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1036327	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1036328	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1036331	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10733548	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10758989	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10758990	0.86[EUR][1000 genomes]
rs10758991	0.88[EUR][1000 genomes]
rs10758992	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10815931	0.88[EUR][1000 genomes]
rs10815933	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10815934	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10815941	0.82[ASN][1000 genomes]
rs10977274	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10977276	0.85[EUR][1000 genomes]
rs10977280	0.86[EUR][1000 genomes]
rs10977291	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12003472	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12340244	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12349666	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1274975	0.81[EUR][1000 genomes]
rs1434270	0.83[EUR][1000 genomes]
rs1812782	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2033553	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2033555	0.84[EUR][1000 genomes]
rs2117327	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2117328	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2117329	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2381897	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2381899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2381900	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2381901	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2381902	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2890831	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3948324	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4460431	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4742533	0.86[ASN][1000 genomes]
rs4742535	0.84[ASN][1000 genomes]
rs6477348	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7026316	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7042505	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7045482	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7846940	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7853986	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7862702	0.83[EUR][1000 genomes]
rs7863593	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7868093	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8181076	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8181195	0.89[EUR][1000 genomes]
rs956154	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv892235	chr9:8700396-8865925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv892236	chr9:8745520-8870553	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv892237	chr9:8752743-8794314	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
7	nsv1015898	chr9:8753534-9011443	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv892238	chr9:8757828-8794314	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
9	nsv892239	chr9:8773599-8805462	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
10	esv2761247	chr9:8775019-8786718	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8752200-8776600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr9:8761600-8777600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:8762600-8779000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:8762800-8778600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:8763200-8778000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr9:8763200-8780600	Weak transcription	Fetal Kidney	kidney
7	chr9:8764800-8783600	Weak transcription	Fetal Stomach	stomach
8	chr9:8767600-8778400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:8769600-8779600	Weak transcription	Fetal Lung	lung
10	chr9:8773600-8777800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr9:8773600-8778400	Weak transcription	Brain Anterior Caudate	brain
12	chr9:8773800-8777600	Weak transcription	Brain Hippocampus Middle	brain
13	chr9:8774000-8779600	Weak transcription	Brain Angular Gyrus	brain
14	chr9:8774200-8777600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr9:8774200-8777800	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links