Variant report

Variant	rs10815931
Chromosome Location	chr9:8752817-8752818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1036326	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1036327	0.85[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1036328	0.85[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1036331	0.90[CEU][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10733548	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10758989	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10758990	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10758991	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10758992	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10815927	0.88[EUR][1000 genomes]
rs10815928	0.82[EUR][1000 genomes]
rs10815929	0.89[EUR][1000 genomes]
rs10815930	0.90[EUR][1000 genomes]
rs10815932	0.87[EUR][1000 genomes]
rs10815933	0.90[CEU][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10815934	0.90[CEU][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes]
rs10815941	0.86[JPT][hapmap]
rs10977272	0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10977273	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10977274	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10977276	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10977280	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10977291	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12003472	0.90[CEU][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12236571	0.84[ASN][1000 genomes]
rs12340244	0.85[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12349666	0.90[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs12350639	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1274975	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1368983	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1434270	0.86[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1434271	0.86[CEU][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1434272	0.84[ASN][1000 genomes]
rs1812782	0.86[JPT][hapmap]
rs2033553	0.86[CEU][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2033555	0.86[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2117326	0.86[JPT][hapmap]
rs2117327	0.90[CEU][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes]
rs2117328	0.85[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2117329	0.90[CEU][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2381897	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2381898	0.88[EUR][1000 genomes]
rs2381899	0.88[EUR][1000 genomes]
rs2381900	0.90[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs2381901	0.89[CEU][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes]
rs2381902	0.85[CEU][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes]
rs2890831	0.89[EUR][1000 genomes]
rs3948324	0.86[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4460431	0.90[CEU][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes]
rs4492433	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4742533	0.85[CEU][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4742535	0.85[CEU][hapmap];0.80[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs4742536	0.83[ASN][1000 genomes]
rs4742537	0.80[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs6477348	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66538109	0.89[EUR][1000 genomes]
rs7026316	0.87[EUR][1000 genomes]
rs7042505	0.86[EUR][1000 genomes]
rs7045482	0.87[EUR][1000 genomes]
rs720821	0.87[EUR][1000 genomes]
rs7846940	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7848017	1.00[JPT][hapmap]
rs7848019	0.82[ASN][1000 genomes]
rs7853986	0.95[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7862702	0.85[EUR][1000 genomes]
rs7863593	0.85[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7868093	0.90[CEU][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes]
rs8181076	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8181195	0.95[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs956154	0.90[CEU][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv892235	chr9:8700396-8865925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv892236	chr9:8745520-8870553	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv892237	chr9:8752743-8794314	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8750000-8760000	Weak transcription	Aorta	Aorta
2	chr9:8750400-8753000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr9:8750400-8753000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr9:8750400-8753200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:8750400-8753600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:8750600-8753400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr9:8751000-8757800	Weak transcription	Fetal Brain Male	brain
8	chr9:8751200-8758000	Weak transcription	Brain Substantia Nigra	brain
9	chr9:8751200-8764400	Weak transcription	Fetal Stomach	stomach
10	chr9:8751400-8754800	Weak transcription	Brain Germinal Matrix	brain
11	chr9:8752200-8754400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:8752200-8755800	Weak transcription	Brain Hippocampus Middle	brain
13	chr9:8752200-8757800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr9:8752200-8759800	Weak transcription	Brain Anterior Caudate	brain
15	chr9:8752200-8760600	Weak transcription	Brain Angular Gyrus	brain
16	chr9:8752200-8760800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr9:8752200-8776600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr9:8752800-8756000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr9:8752800-8756000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr9:8752800-8756200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr9:8752800-8758000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:8752800-8758000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:8752800-8760000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:8752800-8769400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links