Variant report

Variant	rs10977276
Chromosome Location	chr9:8750343-8750344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10124559	0.80[ASN][1000 genomes]
rs1036326	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1036327	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1036328	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1036331	0.89[EUR][1000 genomes]
rs10733548	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10758989	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10758990	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10758991	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10758992	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10815927	0.87[EUR][1000 genomes]
rs10815928	0.82[EUR][1000 genomes]
rs10815929	0.87[EUR][1000 genomes]
rs10815930	0.86[EUR][1000 genomes]
rs10815931	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10815932	0.86[EUR][1000 genomes]
rs10815933	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10815934	0.86[EUR][1000 genomes]
rs10977272	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10977273	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10977274	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10977280	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10977291	0.88[ASN][1000 genomes]
rs12003472	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12236571	0.84[ASN][1000 genomes]
rs12340244	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12349666	0.82[EUR][1000 genomes]
rs12350639	0.83[ASN][1000 genomes]
rs1274975	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1368983	0.85[ASN][1000 genomes]
rs1434270	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1434271	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1434272	0.85[ASN][1000 genomes]
rs2033553	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2033555	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2117327	0.84[EUR][1000 genomes]
rs2117328	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2117329	0.86[EUR][1000 genomes]
rs2381897	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2381898	0.85[EUR][1000 genomes]
rs2381899	0.85[EUR][1000 genomes]
rs2381900	0.85[EUR][1000 genomes]
rs2381901	0.86[EUR][1000 genomes]
rs2381902	0.86[EUR][1000 genomes]
rs2890831	0.86[EUR][1000 genomes]
rs3948324	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4460431	0.84[EUR][1000 genomes]
rs4492433	0.83[ASN][1000 genomes]
rs4742533	0.84[ASN][1000 genomes]
rs4742535	0.82[ASN][1000 genomes]
rs4742536	0.84[ASN][1000 genomes]
rs4742537	0.84[ASN][1000 genomes]
rs6477348	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66538109	0.87[EUR][1000 genomes]
rs7026316	0.83[EUR][1000 genomes]
rs7042505	0.83[EUR][1000 genomes]
rs7045482	0.84[EUR][1000 genomes]
rs720821	0.86[EUR][1000 genomes]
rs7846940	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7848019	0.83[ASN][1000 genomes]
rs7853986	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7862702	0.82[EUR][1000 genomes]
rs7863593	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7868093	0.86[EUR][1000 genomes]
rs8181076	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8181195	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs956154	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv892235	chr9:8700396-8865925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv6474	chr9:8706602-8751414	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv892236	chr9:8745520-8870553	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8735600-8750600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:8737200-8750400	Weak transcription	Fetal Heart	heart
3	chr9:8737600-8750600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:8743600-8750400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr9:8743600-8750400	Weak transcription	Brain Substantia Nigra	brain
6	chr9:8745400-8750600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:8746000-8750600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:8746800-8750400	Weak transcription	Fetal Stomach	stomach
9	chr9:8747600-8750400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:8747600-8750400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:8748200-8750400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr9:8748200-8750400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr9:8748200-8750600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr9:8749000-8750600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:8749200-8750400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:8750000-8751000	Enhancers	Fetal Muscle Trunk	muscle
17	chr9:8750000-8760000	Weak transcription	Aorta	Aorta
18	chr9:8750200-8751400	Enhancers	Fetal Muscle Leg	muscle

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