Variant report

Variant	rs4742537
Chromosome Location	chr9:8765099-8765100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1036326	0.85[ASN][1000 genomes]
rs1036327	0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs1036328	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs1036331	0.87[JPT][hapmap]
rs10465033	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs10465099	0.87[CEU][hapmap]
rs10733548	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs10758990	0.81[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs10758991	0.82[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs10815931	0.80[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs10815933	0.86[JPT][hapmap]
rs10815934	0.87[JPT][hapmap]
rs10815939	0.86[CEU][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs10815940	0.81[EUR][1000 genomes]
rs10815941	0.83[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10977272	0.81[JPT][hapmap]
rs10977276	0.84[ASN][1000 genomes]
rs10977277	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs10977280	0.85[ASN][1000 genomes]
rs10977281	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10977291	0.82[ASN][1000 genomes]
rs12003472	0.86[JPT][hapmap]
rs12236571	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12238382	0.87[ASN][1000 genomes]
rs12340244	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs12349666	0.91[JPT][hapmap]
rs12350639	0.87[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1274975	0.82[ASN][1000 genomes]
rs1368983	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1434270	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs1434271	0.81[JPT][hapmap]
rs1434272	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1812782	0.82[JPT][hapmap]
rs2033553	0.87[JPT][hapmap]
rs2033555	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2117326	0.87[CEU][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2117327	0.86[JPT][hapmap]
rs2117328	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2117329	0.86[JPT][hapmap]
rs2381900	0.91[JPT][hapmap]
rs2381901	0.91[JPT][hapmap]
rs2381902	0.87[JPT][hapmap]
rs3948324	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs4460431	0.86[JPT][hapmap]
rs4492433	0.95[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4742533	0.86[JPT][hapmap]
rs4742536	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55714349	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57136740	0.83[ASN][1000 genomes]
rs60482751	0.83[ASN][1000 genomes]
rs6477348	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7034778	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs72702318	0.85[EUR][1000 genomes]
rs7846940	0.91[JPT][hapmap]
rs7848017	0.83[CEU][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7848019	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7853986	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs7863593	0.86[JPT][hapmap]
rs7868093	0.86[JPT][hapmap]
rs8181195	0.86[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs956154	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv892235	chr9:8700396-8865925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv892236	chr9:8745520-8870553	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv892237	chr9:8752743-8794314	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
7	nsv1015898	chr9:8753534-9011443	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv892238	chr9:8757828-8794314	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8752200-8776600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr9:8752800-8769400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr9:8758600-8773200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:8760800-8767000	Weak transcription	Fetal Heart	heart
5	chr9:8760800-8769200	Weak transcription	Brain Anterior Caudate	brain
6	chr9:8761600-8777600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:8762000-8769400	Weak transcription	Brain Substantia Nigra	brain
8	chr9:8762600-8779000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:8762800-8778600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:8763000-8769200	Weak transcription	Brain Angular Gyrus	brain
11	chr9:8763200-8769000	Weak transcription	Ovary	ovary
12	chr9:8763200-8778000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr9:8763200-8780600	Weak transcription	Fetal Kidney	kidney
14	chr9:8763800-8770000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr9:8764400-8765800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:8764600-8765800	Enhancers	Fetal Lung	lung
17	chr9:8764800-8765200	Weak transcription	Brain Hippocampus Middle	brain
18	chr9:8764800-8783600	Weak transcription	Fetal Stomach	stomach
19	chr9:8765000-8765600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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