Variant report

Variant	rs10124990
Chromosome Location	chr9:117697290-117697291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10118244	1.00[CEU][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10817681	0.92[EUR][1000 genomes]
rs10982443	0.87[EUR][1000 genomes]
rs10982448	0.82[CEU][hapmap];0.92[EUR][1000 genomes]
rs1108983	0.87[EUR][1000 genomes]
rs3181192	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3181346	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3181349	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3181350	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3181353	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3181359	0.92[EUR][1000 genomes]
rs61024439	0.92[EUR][1000 genomes]
rs7028089	0.92[EUR][1000 genomes]
rs7854103	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv6680	chr9:117690388-117699304	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117693800-117697800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr9:117693800-117698800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr9:117694000-117698600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr9:117694200-117699600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:117694400-117698800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:117694400-117700200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:117695000-117698600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr9:117695000-117700200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr9:117695200-117700800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr9:117695600-117701000	Weak transcription	Thymus	Thymus
11	chr9:117696200-117698600	Enhancers	Fetal Lung	lung
12	chr9:117697200-117697600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:117697200-117697800	Enhancers	Fetal Stomach	stomach
14	chr9:117697200-117698800	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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