Variant report

Variant	rs3181353
Chromosome Location	chr9:117693500-117693501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:117693497-117693589	GM19239	blood:	n/a	n/a
2	MYC	chr9:117693494-117693558	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117676811..117678604-chr9:117693310..117696147,2	MCF-7	breast:

Variant related genes	Relation type
TNFSF8	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10118244	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10124990	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10817681	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10982443	0.96[EUR][1000 genomes]
rs10982448	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1108983	0.96[EUR][1000 genomes]
rs3181192	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3181346	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3181349	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3181350	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3181357	0.84[AFR][1000 genomes]
rs3181359	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61024439	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7028089	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7854103	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv6680	chr9:117690388-117699304	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117689400-117693600	Flanking Active TSS	Dnd41	blood
2	chr9:117689600-117693600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:117691800-117693800	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr9:117692200-117693600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr9:117692400-117693600	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr9:117692400-117693800	Enhancers	Spleen	Spleen
7	chr9:117692600-117693600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr9:117692600-117693800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
9	chr9:117692800-117693600	Flanking Active TSS	Primary T cells from cord blood	blood
10	chr9:117692800-117695200	Enhancers	Fetal Lung	lung
11	chr9:117693000-117693600	Enhancers	Primary B cells from peripheral blood	blood
12	chr9:117693000-117693600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
13	chr9:117693000-117693600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
14	chr9:117693000-117693600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
15	chr9:117693000-117693800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
16	chr9:117693000-117694000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
17	chr9:117693200-117693600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr9:117693200-117693600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr9:117693200-117694200	Enhancers	Fetal Thymus	thymus
20	chr9:117693200-117697200	Weak transcription	Adipose Nuclei	Adipose
21	chr9:117693400-117693600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr9:117693400-117693600	Enhancers	Esophagus	oesophagus
23	chr9:117693400-117693600	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
24	chr9:117693400-117693600	Enhancers	Right Atrium	heart
25	chr9:117693400-117693600	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
26	chr9:117693400-117693800	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr9:117693400-117694000	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr9:117693400-117694200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr9:117693400-117694200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr9:117693400-117694200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr9:117693400-117694400	Enhancers	Primary T cells fromperipheralblood	blood
32	chr9:117693400-117694400	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr9:117693400-117694400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr9:117693400-117694400	Flanking Active TSS	Thymus	Thymus
35	chr9:117693400-117695200	Enhancers	Primary T helper cells fromperipheralblood	blood

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