Variant report

Variant	rs3181346
Chromosome Location	chr9:117694522-117694523
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10118244	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10124990	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10817681	0.92[EUR][1000 genomes]
rs10982443	0.87[EUR][1000 genomes]
rs10982448	0.82[CEU][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes]
rs1108983	0.87[EUR][1000 genomes]
rs12349613	1.00[CHD][hapmap]
rs3181192	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3181194	0.96[YRI][hapmap]
rs3181349	0.85[CEU][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3181350	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3181353	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3181359	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3181362	0.94[ASW][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap]
rs3789882	0.94[ASW][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs61024439	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6478118	0.96[YRI][hapmap]
rs7028089	0.92[EUR][1000 genomes]
rs7854103	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv6680	chr9:117690388-117699304	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117692800-117695200	Enhancers	Fetal Lung	lung
2	chr9:117693200-117697200	Weak transcription	Adipose Nuclei	Adipose
3	chr9:117693400-117695200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr9:117693600-117697200	Weak transcription	Right Atrium	heart
5	chr9:117693800-117695000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr9:117693800-117697800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr9:117693800-117698800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr9:117694000-117695200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:117694000-117698600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr9:117694200-117694600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:117694200-117699600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr9:117694400-117694800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr9:117694400-117695600	Enhancers	Thymus	Thymus
14	chr9:117694400-117698800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr9:117694400-117700200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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