Variant report
| Variant | rs12349613 |
|---|---|
| Chromosome Location | chr9:117607806-117607807 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:8)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:8 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | YY1 | chr9:117607791-117608036 | ECC-1 | luminal epithelium: | n/a | chr9:117607869-117607881 chr9:117607848-117607859 |
| 2 | YY1 | chr9:117607756-117607957 | K562 | blood: | n/a | chr9:117607869-117607881 chr9:117607848-117607859 |
| 3 | YY1 | chr9:117607764-117607926 | K562 | blood: | n/a | chr9:117607869-117607881 chr9:117607848-117607859 |
| 4 | YY1 | chr9:117607692-117608008 | A549 | lung: | n/a | chr9:117607869-117607881 chr9:117607848-117607859 |
| 5 | YY1 | chr9:117607760-117607987 | SK-N-SH_RA | brain: | n/a | chr9:117607869-117607881 chr9:117607848-117607859 |
| 6 | YY1 | chr9:117607627-117607998 | H1-hESC | embryonic stem cell: | n/a | chr9:117607869-117607881 chr9:117607848-117607859 |
| 7 | YY1 | chr9:117607749-117608017 | SK-N-SH | brain: | n/a | chr9:117607869-117607881 chr9:117607848-117607859 |
| 8 | YY1 | chr9:117607653-117608053 | H1-hESC | embryonic stem cell: | n/a | chr9:117607869-117607881 chr9:117607848-117607859 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000229817 | TF binding region |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10119267 | 0.93[EUR][1000 genomes] |
| rs10120258 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10122059 | 1.00[EUR][1000 genomes] |
| rs10982428 | 0.93[EUR][1000 genomes] |
| rs10982430 | 0.93[EUR][1000 genomes] |
| rs10982432 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs10982437 | 0.93[EUR][1000 genomes] |
| rs12336261 | 0.88[EUR][1000 genomes] |
| rs12336469 | 0.87[EUR][1000 genomes] |
| rs12339917 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12342663 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12342775 | 0.93[EUR][1000 genomes] |
| rs12350663 | 0.87[EUR][1000 genomes] |
| rs12350714 | 0.87[EUR][1000 genomes] |
| rs12350737 | 1.00[EUR][1000 genomes] |
| rs28464595 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs3181192 | 1.00[CHD][hapmap] |
| rs3181346 | 1.00[CHD][hapmap] |
| rs3181350 | 1.00[CHD][hapmap] |
| rs56361207 | 0.93[EUR][1000 genomes] |
| rs59758748 | 0.93[EUR][1000 genomes] |
| rs7037415 | 0.87[EUR][1000 genomes] |
| rs7037755 | 0.87[EUR][1000 genomes] |
| rs727844 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831695 | chr9:117567626-117726247 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:117602200-117615400 | Weak transcription | Pancreas | Pancrea |
| 2 | chr9:117607200-117608000 | Enhancers | Thymus | Thymus |
