Variant report

Variant	rs12350663
Chromosome Location	chr9:117613884-117613885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10119267	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10120258	0.81[EUR][1000 genomes]
rs10122059	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10982428	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10982430	0.93[EUR][1000 genomes]
rs10982432	0.93[EUR][1000 genomes]
rs10982437	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12336469	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12339917	0.81[EUR][1000 genomes]
rs12342663	0.93[EUR][1000 genomes]
rs12342775	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12347755	0.84[AMR][1000 genomes]
rs12349613	0.87[EUR][1000 genomes]
rs12350714	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12350737	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28464595	0.93[EUR][1000 genomes]
rs56361207	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59758748	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6478114	0.84[AMR][1000 genomes]
rs7030310	0.84[AMR][1000 genomes]
rs7035053	0.84[AMR][1000 genomes]
rs7037415	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7037755	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs727844	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117602200-117615400	Weak transcription	Pancreas	Pancrea
2	chr9:117610400-117614200	Weak transcription	Fetal Intestine Small	intestine
3	chr9:117611200-117614000	Enhancers	HSMM	muscle
4	chr9:117611200-117615000	Enhancers	NHDF-Ad	bronchial
5	chr9:117611600-117618800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:117611800-117614800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:117611800-117615800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:117612000-117614000	Enhancers	HSMMtube	muscle
9	chr9:117612000-117614600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:117612000-117615600	Enhancers	Osteobl	bone
11	chr9:117612400-117614600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr9:117612400-117615000	Enhancers	Adipose Nuclei	Adipose
13	chr9:117612400-117615600	Enhancers	NHLF	lung
14	chr9:117613000-117614600	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr9:117613000-117616600	Enhancers	Stomach Mucosa	stomach
16	chr9:117613200-117614200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:117613200-117614200	Enhancers	Fetal Lung	lung
18	chr9:117613200-117614400	Enhancers	Dnd41	blood
19	chr9:117613200-117615000	Enhancers	Fetal Stomach	stomach
20	chr9:117613200-117615800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr9:117613400-117614000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:117613400-117614000	Enhancers	Gastric	stomach
23	chr9:117613400-117614000	Enhancers	Lung	lung
24	chr9:117613400-117614400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr9:117613400-117614600	Enhancers	Small Intestine	intestine
26	chr9:117613400-117615000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr9:117613400-117615000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr9:117613400-117615600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:117613400-117615600	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr9:117613400-117617000	Enhancers	Fetal Intestine Large	intestine
31	chr9:117613400-117622600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr9:117613600-117614000	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr9:117613600-117615000	Enhancers	Hela-S3	cervix
34	chr9:117613600-117615600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:117613600-117615600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:117613600-117616800	Weak transcription	HUVEC	blood vessel
37	chr9:117613800-117614000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr9:117613800-117614600	Enhancers	Primary hematopoietic stem cells	blood
39	chr9:117613800-117614800	Weak transcription	Fetal Muscle Trunk	muscle
40	chr9:117613800-117615000	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links