Variant report

Variant	rs10982430
Chromosome Location	chr9:117617427-117617428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10119267	1.00[EUR][1000 genomes]
rs10120258	0.87[EUR][1000 genomes]
rs10122059	0.93[EUR][1000 genomes]
rs10982428	1.00[EUR][1000 genomes]
rs10982432	1.00[EUR][1000 genomes]
rs10982437	1.00[EUR][1000 genomes]
rs12336261	0.82[EUR][1000 genomes]
rs12336469	0.93[EUR][1000 genomes]
rs12339917	0.87[EUR][1000 genomes]
rs12342663	1.00[EUR][1000 genomes]
rs12342775	1.00[EUR][1000 genomes]
rs12349613	0.93[EUR][1000 genomes]
rs12350663	0.93[EUR][1000 genomes]
rs12350714	0.93[EUR][1000 genomes]
rs12350737	0.93[EUR][1000 genomes]
rs28464595	1.00[EUR][1000 genomes]
rs56361207	1.00[EUR][1000 genomes]
rs59758748	1.00[EUR][1000 genomes]
rs7037415	0.93[EUR][1000 genomes]
rs7037755	0.93[EUR][1000 genomes]
rs727844	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117611600-117618800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:117613400-117622600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:117614400-117617800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:117614400-117618000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:117614600-117617800	Weak transcription	HSMM	muscle
6	chr9:117614600-117618600	Weak transcription	HSMMtube	muscle
7	chr9:117614600-117618800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr9:117614800-117617800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:117615000-117617600	Weak transcription	NHDF-Ad	bronchial
10	chr9:117615000-117618800	Weak transcription	Fetal Stomach	stomach
11	chr9:117615600-117617600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:117615600-117617800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:117615600-117617800	Weak transcription	NHLF	lung
14	chr9:117616800-117619000	Enhancers	HUVEC	blood vessel
15	chr9:117617400-117617800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:117617400-117618000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:117617400-117618800	Enhancers	Osteobl	bone
18	chr9:117617400-117619400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:117617400-117619400	Enhancers	Adipose Nuclei	Adipose
20	chr9:117617400-117620000	Enhancers	Muscle Satellite Cultured Cells	--

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