Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117615331..117617300-chr9:117620476..117622767,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10119267	1.00[EUR][1000 genomes]
rs10120258	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10122059	0.93[EUR][1000 genomes]
rs10982428	1.00[EUR][1000 genomes]
rs10982430	1.00[EUR][1000 genomes]
rs10982432	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10982437	1.00[EUR][1000 genomes]
rs12336261	0.82[EUR][1000 genomes]
rs12336469	0.93[EUR][1000 genomes]
rs12339917	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12342775	1.00[EUR][1000 genomes]
rs12349613	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12350663	0.93[EUR][1000 genomes]
rs12350714	0.93[EUR][1000 genomes]
rs12350737	0.93[EUR][1000 genomes]
rs28464595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56361207	1.00[EUR][1000 genomes]
rs59758748	1.00[EUR][1000 genomes]
rs7037415	0.93[EUR][1000 genomes]
rs7037755	0.93[EUR][1000 genomes]
rs727844	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117613400-117622600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:117619200-117623600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr9:117619200-117626800	Weak transcription	Fetal Stomach	stomach
4	chr9:117619400-117622200	Weak transcription	Adipose Nuclei	Adipose
5	chr9:117619800-117623800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:117619800-117626800	Weak transcription	HSMM	muscle
7	chr9:117620000-117622200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:117620200-117622800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:117621400-117622000	Enhancers	Fetal Kidney	kidney

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