Variant report

Variant	rs7037755
Chromosome Location	chr9:117616813-117616814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117615331..117617300-chr9:117620476..117622767,2	MCF-7	breast:
2	chr9:117611299..117613789-chr9:117615464..117617211,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10119267	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10120258	0.81[EUR][1000 genomes]
rs10122059	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10217710	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10982428	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10982430	0.93[EUR][1000 genomes]
rs10982432	0.93[EUR][1000 genomes]
rs10982437	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12336017	0.84[AMR][1000 genomes]
rs12336469	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12339917	0.81[EUR][1000 genomes]
rs12340283	0.84[AMR][1000 genomes]
rs12342663	0.93[EUR][1000 genomes]
rs12342775	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12347755	0.89[AMR][1000 genomes]
rs12349613	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12350663	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12350714	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12350737	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28464595	0.93[EUR][1000 genomes]
rs56361207	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59758748	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6478114	0.89[AMR][1000 genomes]
rs7030310	0.89[AMR][1000 genomes]
rs7035053	0.89[AMR][1000 genomes]
rs7037415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs727844	0.81[EUR][1000 genomes]
rs963625	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117611600-117618800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:117613400-117617000	Enhancers	Fetal Intestine Large	intestine
3	chr9:117613400-117622600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:117614200-117617000	Enhancers	Duodenum Mucosa	Duodenum
5	chr9:117614200-117617400	Enhancers	Fetal Intestine Small	intestine
6	chr9:117614400-117617000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr9:117614400-117617800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:117614400-117618000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:117614600-117617400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:117614600-117617800	Weak transcription	HSMM	muscle
11	chr9:117614600-117618600	Weak transcription	HSMMtube	muscle
12	chr9:117614600-117618800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr9:117614800-117617800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:117615000-117617600	Weak transcription	NHDF-Ad	bronchial
15	chr9:117615000-117618800	Weak transcription	Fetal Stomach	stomach
16	chr9:117615600-117617400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:117615600-117617400	Weak transcription	Adipose Nuclei	Adipose
18	chr9:117615600-117617400	Weak transcription	Osteobl	bone
19	chr9:117615600-117617600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:117615600-117617800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:117615600-117617800	Weak transcription	NHLF	lung
22	chr9:117615800-117617400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr9:117615800-117617400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:117616800-117617000	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr9:117616800-117617000	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr9:117616800-117617000	Enhancers	Gastric	stomach
27	chr9:117616800-117617000	Enhancers	Small Intestine	intestine
28	chr9:117616800-117619000	Enhancers	HUVEC	blood vessel

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