Variant report

Variant	rs963625
Chromosome Location	chr9:117643068-117643069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10119267	0.84[AMR][1000 genomes]
rs10122059	0.84[AMR][1000 genomes]
rs10217710	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10982428	0.84[AMR][1000 genomes]
rs10982437	0.84[AMR][1000 genomes]
rs12336017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12340283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12342775	0.84[AMR][1000 genomes]
rs12347755	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12349613	1.00[CEU][hapmap]
rs12350714	0.84[AMR][1000 genomes]
rs12350737	0.84[AMR][1000 genomes]
rs56361207	0.84[AMR][1000 genomes]
rs59758748	0.84[AMR][1000 genomes]
rs6478114	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7030310	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7035053	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7037415	0.84[AMR][1000 genomes]
rs7037755	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893767	chr9:117627569-117689838	Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117633000-117647400	Weak transcription	Stomach Mucosa	stomach
2	chr9:117642200-117643200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr9:117642200-117643800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:117642200-117644000	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr9:117642400-117643400	Enhancers	HUVEC	blood vessel
6	chr9:117642400-117649000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr9:117642600-117643200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:117642800-117643400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:117643000-117643800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr9:117643000-117652000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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