Variant report
| Variant | rs12350737 |
|---|---|
| Chromosome Location | chr9:117608270-117608271 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10117421 | 1.00[CHB][hapmap] |
| rs10119267 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs10120258 | 0.94[EUR][1000 genomes] |
| rs10122059 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10217710 | 0.84[AMR][1000 genomes] |
| rs10982428 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs10982430 | 0.93[EUR][1000 genomes] |
| rs10982432 | 0.93[EUR][1000 genomes] |
| rs10982437 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12336017 | 0.84[AMR][1000 genomes] |
| rs12336261 | 0.88[EUR][1000 genomes] |
| rs12336469 | 0.95[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12339917 | 0.94[EUR][1000 genomes] |
| rs12340283 | 0.84[AMR][1000 genomes] |
| rs12342663 | 0.93[EUR][1000 genomes] |
| rs12342775 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12347755 | 0.89[AMR][1000 genomes] |
| rs12349613 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs12350663 | 0.94[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12350714 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1330361 | 1.00[CHB][hapmap] |
| rs28464595 | 0.93[EUR][1000 genomes] |
| rs3181192 | 1.00[CHD][hapmap] |
| rs3181346 | 1.00[CHD][hapmap] |
| rs3181350 | 1.00[CHD][hapmap] |
| rs56361207 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs59758748 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6478114 | 0.89[AMR][1000 genomes] |
| rs7030310 | 0.89[AMR][1000 genomes] |
| rs7035053 | 0.89[AMR][1000 genomes] |
| rs7037415 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7037755 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs727844 | 0.94[EUR][1000 genomes] |
| rs963625 | 0.84[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831695 | chr9:117567626-117726247 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:117602200-117615400 | Weak transcription | Pancreas | Pancrea |
| 2 | chr9:117608000-117608800 | Weak transcription | Thymus | Thymus |
