Variant report

Variant	rs10982437
Chromosome Location	chr9:117625207-117625208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117589845..117591856-chr9:117624783..117627260,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10119267	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10120258	0.87[EUR][1000 genomes]
rs10122059	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10217710	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10982428	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10982430	1.00[EUR][1000 genomes]
rs10982432	1.00[EUR][1000 genomes]
rs12336017	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12336261	0.82[EUR][1000 genomes]
rs12336469	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12339917	0.87[EUR][1000 genomes]
rs12340283	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12342663	1.00[EUR][1000 genomes]
rs12342775	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12347755	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12349613	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs12350663	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12350714	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12350737	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28464595	1.00[EUR][1000 genomes]
rs3181192	1.00[CHD][hapmap]
rs3181346	1.00[CHD][hapmap]
rs3181350	1.00[CHD][hapmap]
rs56361207	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59758748	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6478114	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7030310	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7035053	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7037415	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7037755	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs727844	0.87[EUR][1000 genomes]
rs963625	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117619200-117626800	Weak transcription	Fetal Stomach	stomach
2	chr9:117619800-117626800	Weak transcription	HSMM	muscle
3	chr9:117624400-117626800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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