Variant report

Variant	rs12347755
Chromosome Location	chr9:117632450-117632451
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10119267	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10217710	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10982428	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10982437	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12336017	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12336469	0.84[AMR][1000 genomes]
rs12340283	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12342775	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12349613	1.00[CEU][hapmap]
rs12350663	0.84[AMR][1000 genomes]
rs12350714	0.89[AMR][1000 genomes]
rs12350737	0.89[AMR][1000 genomes]
rs56361207	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs59758748	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6478114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7030310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7035053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7037415	0.89[AMR][1000 genomes]
rs7037755	0.89[AMR][1000 genomes]
rs963625	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893767	chr9:117627569-117689838	Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117631400-117633000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr9:117631600-117632600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
3	chr9:117631600-117632600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
4	chr9:117631600-117632800	Enhancers	Primary B cells from cord blood	blood
5	chr9:117631600-117632800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
6	chr9:117631600-117632800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr9:117631600-117632800	Enhancers	Dnd41	blood
8	chr9:117631600-117632800	Enhancers	HepG2	liver
9	chr9:117631600-117633000	Enhancers	Primary B cells from peripheral blood	blood
10	chr9:117631600-117633200	Enhancers	Primary T cells fromperipheralblood	blood
11	chr9:117631600-117633200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr9:117631800-117632600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:117631800-117632600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:117631800-117632600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr9:117631800-117632600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
16	chr9:117631800-117632600	Enhancers	Lung	lung
17	chr9:117631800-117632800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr9:117631800-117632800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:117631800-117632800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr9:117631800-117632800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr9:117631800-117632800	Enhancers	Fetal Thymus	thymus
22	chr9:117631800-117632800	Enhancers	Gastric	stomach
23	chr9:117631800-117632800	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr9:117631800-117632800	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr9:117631800-117632800	Enhancers	Hela-S3	cervix
26	chr9:117631800-117633000	Enhancers	Stomach Mucosa	stomach
27	chr9:117631800-117633200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr9:117632000-117632600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr9:117632000-117632600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr9:117632000-117632600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr9:117632000-117632600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr9:117632000-117632600	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr9:117632000-117632800	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr9:117632000-117632800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
35	chr9:117632200-117632600	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr9:117632200-117632600	Flanking Active TSS	Primary T cells from cord blood	blood
37	chr9:117632200-117632600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
38	chr9:117632200-117632600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
39	chr9:117632200-117632600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr9:117632200-117632600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
41	chr9:117632200-117632600	Enhancers	Spleen	Spleen
42	chr9:117632200-117632800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
43	chr9:117632200-117632800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr9:117632200-117632800	Enhancers	Fetal Intestine Small	intestine
45	chr9:117632200-117632800	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr9:117632200-117632800	Enhancers	Thymus	Thymus
47	chr9:117632400-117632600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
48	chr9:117632400-117632800	Enhancers	Fetal Intestine Large	intestine

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