Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10119267	0.87[EUR][1000 genomes]
rs10120258	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10122059	0.94[EUR][1000 genomes]
rs10982428	0.87[EUR][1000 genomes]
rs10982430	0.87[EUR][1000 genomes]
rs10982432	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10982437	0.87[EUR][1000 genomes]
rs12336261	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12336469	0.81[EUR][1000 genomes]
rs12342663	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12342775	0.87[EUR][1000 genomes]
rs12349613	0.92[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12350663	0.81[EUR][1000 genomes]
rs12350714	0.81[EUR][1000 genomes]
rs12350737	0.94[EUR][1000 genomes]
rs28464595	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3181192	1.00[CHD][hapmap]
rs3181346	1.00[CHD][hapmap]
rs3181350	1.00[CHD][hapmap]
rs56361207	0.87[EUR][1000 genomes]
rs59758748	0.87[EUR][1000 genomes]
rs7037415	0.81[EUR][1000 genomes]
rs7037755	0.81[EUR][1000 genomes]
rs727844	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117587600-117589800	Enhancers	Fetal Intestine Large	intestine
2	chr9:117587800-117591800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:117588200-117592000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:117588200-117592200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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