Variant report

Variant	rs10122059
Chromosome Location	chr9:117601117-117601118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10119267	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10120258	0.94[EUR][1000 genomes]
rs10982428	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10982430	0.93[EUR][1000 genomes]
rs10982432	0.93[EUR][1000 genomes]
rs10982437	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12336017	0.84[AMR][1000 genomes]
rs12336261	0.88[EUR][1000 genomes]
rs12336469	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12339917	0.94[EUR][1000 genomes]
rs12340283	0.84[AMR][1000 genomes]
rs12342663	0.93[EUR][1000 genomes]
rs12342775	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12349613	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12350663	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12350714	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12350737	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28464595	0.93[EUR][1000 genomes]
rs56361207	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59758748	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7037415	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7037755	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs727844	0.94[EUR][1000 genomes]
rs963625	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117598800-117602000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:117598800-117602000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:117600400-117601600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:117601000-117601600	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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