Variant report

Variant	rs10126000
Chromosome Location	chr9:21578617-21578618
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10118880	0.82[ASN][1000 genomes]
rs10124312	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1013241	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2123340	0.82[EUR][1000 genomes]
rs7033598	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7872217	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9298817	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
2	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21575800-21592200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:21576000-21578800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr9:21576000-21578800	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr9:21576200-21578800	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr9:21576200-21578800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr9:21576400-21578800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr9:21576600-21579000	Weak transcription	Stomach Mucosa	stomach
8	chr9:21576600-21579200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:21576800-21578800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr9:21577000-21578800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:21577000-21578800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr9:21577000-21578800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:21577000-21578800	Weak transcription	Thymus	Thymus
14	chr9:21577200-21578800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr9:21577200-21585800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:21577400-21578800	Enhancers	NHLF	lung
17	chr9:21577400-21579600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr9:21577800-21578800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr9:21577800-21578800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:21577800-21578800	Enhancers	Hela-S3	cervix
21	chr9:21577800-21579000	Weak transcription	HSMM	muscle
22	chr9:21577800-21579200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr9:21577800-21579200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr9:21578000-21579000	Weak transcription	GM12878-XiMat	blood
25	chr9:21578000-21579000	Weak transcription	HMEC	breast
26	chr9:21578000-21579200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr9:21578000-21579400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr9:21578000-21579800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:21578200-21578800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr9:21578200-21578800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr9:21578200-21578800	Weak transcription	NHDF-Ad	bronchial
32	chr9:21578400-21578800	Enhancers	Duodenum Mucosa	Duodenum
33	chr9:21578400-21579000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr9:21578400-21580800	Flanking Active TSS	A549	lung
35	chr9:21578600-21578800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr9:21578600-21578800	Enhancers	Dnd41	blood
37	chr9:21578600-21579000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr9:21578600-21579000	Active TSS	Primary T cells from cord blood	blood
39	chr9:21578600-21579000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr9:21578600-21579200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:21578600-21579600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
42	chr9:21578600-21579600	Enhancers	HUVEC	blood vessel
43	chr9:21578600-21579600	Flanking Active TSS	Osteobl	bone
44	chr9:21578600-21579800	Enhancers	NH-A	brain
45	chr9:21578600-21579800	Enhancers	NHEK	skin

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