Variant report

Variant	rs9298817
Chromosome Location	chr9:21576591-21576592
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10118880	0.82[EUR][1000 genomes]
rs10124312	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10126000	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1013241	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10738594	0.82[EUR][1000 genomes]
rs10757225	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs10965064	0.81[EUR][1000 genomes]
rs4141712	0.82[EUR][1000 genomes]
rs4141713	0.85[EUR][1000 genomes]
rs7033598	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7872217	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9298816	0.85[EUR][1000 genomes]
rs9657607	0.81[EUR][1000 genomes]
rs996442	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
2	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21575400-21577000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:21575400-21577800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:21575600-21577000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr9:21575600-21577200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr9:21575800-21576600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr9:21575800-21577400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:21575800-21577600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr9:21575800-21592200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:21576000-21576600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:21576000-21576600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr9:21576000-21576600	Enhancers	Colon Smooth Muscle	Colon
12	chr9:21576000-21576800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:21576000-21577000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:21576000-21577200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr9:21576000-21577200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:21576000-21577200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:21576000-21577200	Flanking Active TSS	HUVEC	blood vessel
18	chr9:21576000-21577400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:21576000-21577400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
20	chr9:21576000-21577800	Flanking Active TSS	Hela-S3	cervix
21	chr9:21576000-21578800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr9:21576000-21578800	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr9:21576200-21576600	Enhancers	Primary T cells from cord blood	blood
24	chr9:21576200-21576600	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr9:21576200-21576800	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr9:21576200-21576800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:21576200-21576800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr9:21576200-21576800	Active TSS	HSMM	muscle
29	chr9:21576200-21577000	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr9:21576200-21577000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr9:21576200-21577200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:21576200-21577200	Flanking Active TSS	HMEC	breast
33	chr9:21576200-21577200	Active TSS	NHLF	lung
34	chr9:21576200-21577400	Flanking Active TSS	NHEK	skin
35	chr9:21576200-21578800	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr9:21576200-21578800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr9:21576400-21576600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
38	chr9:21576400-21576600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
39	chr9:21576400-21576600	Enhancers	Fetal Kidney	kidney
40	chr9:21576400-21576600	Enhancers	Stomach Mucosa	stomach
41	chr9:21576400-21576800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:21576400-21576800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr9:21576400-21576800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr9:21576400-21576800	Active TSS	Brain Angular Gyrus	brain
45	chr9:21576400-21576800	Active TSS	Brain Anterior Caudate	brain
46	chr9:21576400-21576800	Flanking Active TSS	Brain Cingulate Gyrus	brain
47	chr9:21576400-21576800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
48	chr9:21576400-21576800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr9:21576400-21576800	Active TSS	Brain Substantia Nigra	brain
50	chr9:21576400-21576800	Active TSS	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links