Variant report

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10118880	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10124312	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10126000	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1013241	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10738594	0.82[AMR][1000 genomes]
rs10757225	0.89[GIH][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes]
rs1377193	0.86[EUR][1000 genomes]
rs4141713	0.83[EUR][1000 genomes]
rs7872217	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9298816	0.83[EUR][1000 genomes]
rs9298817	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs996442	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
2	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21560800-21567400	Weak transcription	NHDF-Ad	bronchial
2	chr9:21563800-21567000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:21563800-21567200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:21564000-21567200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:21564200-21566600	Enhancers	NH-A	brain
6	chr9:21564200-21567000	Enhancers	Osteobl	bone
7	chr9:21564400-21567600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:21564600-21565800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr9:21564600-21565800	Flanking Active TSS	NHEK	skin
10	chr9:21564600-21566400	Enhancers	Hela-S3	cervix
11	chr9:21564600-21570400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:21564800-21568000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr9:21565000-21565800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:21565200-21565800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr9:21565200-21567600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:21565200-21568600	Flanking Active TSS	A549	lung
17	chr9:21565400-21565800	Weak transcription	NHLF	lung
18	chr9:21565600-21565800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr9:21565600-21566400	Enhancers	HMEC	breast
20	chr9:21565600-21576000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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