Variant report

Variant	rs10130015
Chromosome Location	chr14:63498895-63498896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1007062	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs10129513	0.88[CEU][hapmap]
rs10132214	0.94[CEU][hapmap]
rs10132410	0.94[CEU][hapmap]
rs10133358	0.88[CEU][hapmap]
rs10139542	0.94[CEU][hapmap]
rs10142476	0.94[CEU][hapmap]
rs11158468	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11158469	0.88[CEU][hapmap]
rs11624884	0.87[CEU][hapmap]
rs12147350	0.82[EUR][1000 genomes]
rs12589987	0.84[EUR][1000 genomes]
rs1316916	0.84[CEU][hapmap]
rs1950975	0.84[CEU][hapmap]
rs1950986	1.00[CEU][hapmap]
rs1950987	0.88[CEU][hapmap];0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs1950988	0.88[CEU][hapmap]
rs1950989	0.88[CEU][hapmap]
rs1950990	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs1956673	0.88[CEU][hapmap];0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs1956675	0.86[ASN][1000 genomes]
rs1956679	0.84[EUR][1000 genomes]
rs28490569	0.81[EUR][1000 genomes]
rs3906692	0.89[CEU][hapmap]
rs3906693	0.87[CEU][hapmap]
rs3910327	0.88[CEU][hapmap];0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs3910328	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs3910329	0.88[CEU][hapmap]
rs4609762	0.86[ASN][1000 genomes]
rs5010674	0.88[CEU][hapmap]
rs5010675	0.86[CEU][hapmap]
rs5010676	0.87[CEU][hapmap]
rs6573468	0.89[CEU][hapmap]
rs6573475	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6573476	0.88[CEU][hapmap];0.95[CHB][hapmap]
rs67610164	0.85[EUR][1000 genomes]
rs7140971	0.81[EUR][1000 genomes]
rs7154634	0.88[CEU][hapmap];0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs7156008	0.85[CEU][hapmap]
rs7159483	0.94[CEU][hapmap]
rs7159948	0.88[CEU][hapmap]
rs7160761	0.94[CEU][hapmap]
rs717059	0.88[CEU][hapmap];0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs8004870	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs8006836	0.84[EUR][1000 genomes]
rs8018212	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs8021914	0.86[ASN][1000 genomes]
rs9323430	0.94[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63497400-63502800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:63498400-63499200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr14:63498800-63499600	Enhancers	Fetal Stomach	stomach

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